Introduction | Installation | Quick Overview | Datecuts | Build Networks | Visualize Networks | Analyze Networks
Package: PDN 0.1.0
PDN: Personalized Disease Network
Building patient level networks for prediction of medical outcomes and draw the cluster of network. This package is based on paper Personalized disease networks for understanding and predicting cardiovascular diseases and other complex processes (See Cabrera et al. <http://circ.ahajournals.org/content/134/Suppl_1/A14957>).
Authors:
PDN_0.1.0.tar.gz
PDN_0.1.0.zip(r-4.7-any)PDN_0.1.0.zip(r-4.6-any)PDN_0.1.0.zip(r-4.5-any)
PDN_0.1.0.tgz(r-4.6-any)PDN_0.1.0.tgz(r-4.5-any)
PDN_0.1.0.tar.gz(r-4.7-any)PDN_0.1.0.tar.gz(r-4.6-any)
PDN_0.1.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION
card.svg |card.png
PDN/json (API)
| # Install 'PDN' in R: |
| install.packages('PDN', repos = c('https://bruce1edward.r-universe.dev', 'https://cloud.r-project.org')) |
Datasets:
- comorbidity_data - Sampele comorbidity data set
- demographic_data - Sampele demographic data set
- survival_data - Sampele Survival data set
This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.
Last updated from:e02c3ae5f7. Checks:7 NOTE, 2 OK. Indexed: yes.
| Target | Result | Time | Files | Syslog |
|---|---|---|---|---|
| linux-devel-x86_64 | NOTE | 162 | ||
| source / vignettes | OK | 209 | ||
| linux-release-x86_64 | NOTE | 156 | ||
| macos-release-arm64 | NOTE | 188 | ||
| macos-oldrel-arm64 | NOTE | 198 | ||
| windows-devel | NOTE | 105 | ||
| windows-release | NOTE | 134 | ||
| windows-oldrel | NOTE | 91 | ||
| wasm-release | OK | 113 |
Exports:buildnetworksdatecutdraw.PDNdraw.PDN.circledraw.PDN.cluster
Dependencies:clicodacodetoolscpp11farverforeachggplot2glmnetgluegtableisobanditeratorslabelinglatticelifecyclemagrittrMatrixnetworkpillarpkgconfigR6RColorBrewerRcppRcppEigenrlangS7scalesshapestatnet.commonsurvivaltibbleutf8vctrsviridisLitewithr
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| Personized Disease Network | PDN-package |
| Generating Network Matrix | buildnetworks |
| Sampele comorbidity data set | comorbidity_data |
| Generating Optimal cuts for the Data | datecut |
| Sampele demographic data set | demographic_data |
| Draw Personalized Disease Network for one patient with network and ggplot2 | draw.PDN |
| Draw Personalized Disease Network for one patient | draw.PDN.circle |
| Draw Personalized Disease Network for cluster of patients | draw.PDN.cluster |
| Sampele Survival data set | survival_data |
